Scaffold B570J40625_100000934

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000934
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52255
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (76.47%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009530	Metagenome / Metatranscriptome	316	Y
F023344	Metagenome / Metatranscriptome	210	Y
F030758	Metagenome / Metatranscriptome	184	Y
F037095	Metagenome / Metatranscriptome	168	Y
F043932	Metagenome / Metatranscriptome	155	Y
F043940	Metagenome / Metatranscriptome	155	Y
F047059	Metagenome / Metatranscriptome	150	Y
F050377	Metagenome / Metatranscriptome	145	Y
F053291	Metagenome / Metatranscriptome	141	N
F068831	Metagenome / Metatranscriptome	124	N
F085700	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000093429	F085700	AGGCGG	MAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMIEAKYGAVDRNLTIKSLEETRVRDSKYIMDLDSF*
B570J40625_10000093430	F050377	AGGA	MTSTPTTTREYLKAQGITVGKRGRFSAAALGVISKAAQEGVVFTDKKNVK*
B570J40625_10000093435	F047059	GGAGG	LTRSSHFLEYMKIHLISLNQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVANDIMIDNERVY*
B570J40625_10000093437	F053291	GAG	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
B570J40625_10000093438	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNNSNLEEGEAYAEYKFMQFAPDNLKQSYNEYYGYIEGDEFLL*
B570J40625_10000093442	F001043	AGGAG	MSEYKDGWDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGSL*
B570J40625_10000093443	F000311	AGGTGG	MYFELTAPDRLSMERAYWDAQITGLDPQAMSPLTFNIGTGSIEKVSRLRDKYNLTESYVSDYETTGY*
B570J40625_10000093447	F043940	AGG	MKNRFRVEIYDANKANDLTIYSEQGVDKEYLTELAFSNRGNFLGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNQLTREELGL*
B570J40625_10000093453	F004840	GGAG	MYKLTCAYDGNAPHWTAEYEKEFGAWESFFRFTDWGMANEFSTVNIMTPTGKMYTKVFYRNGMVSVK*
B570J40625_10000093461	F009530	GGAG	MTITYSIWQGSKLISIDNVAHEAKAIDNVIQSLNDSELGKVKKFTANVMDIKVTA*
B570J40625_10000093478	F037095	AGGAGG	MAKAKEDLNGDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLMLGGFAATAPVILKALNPNEPSFGFTKN*
B570J40625_10000093482	F043932	AGGA	MAKKFKSLLNLLTLPEDPLVGLTGDVYFNVTSKNIKIYNGAIWVDLTPASKDPAPFYMHTHAYDGSVHTVNLNETVYFDNLNQNSGVEETIPVIIGLDGGTPTSSYANANYTQLTLLDGGQIGD*
B570J40625_10000093483	F068831	GGAGG	LATNYPTSKDNLTNPAATESMEGHAALHGTVNDAIEAIENKLGVNGSTDVNSIDYKVSQLEANLATLDAENASELLGLDGNNDLTIDGIENKTAIDSFSKTVYKTAKYSLQIHKSAGNLTSTSNILLLNDGTDVYISESDMVSNTDQTLANVTFEENNGIISLCVTPVSGSVKVRYFRTALKA*
B570J40625_10000093485	F030758	GGA	MATDNKNFKVKNGLNVAGTATFGSNVVLGTTPLRFDTATNKLQIQLNGAWVPIAFNSEIPDPAAQVGFMDIGLAIDYNGQPIYTLQANGVNPGPTSKFVDGGSPYSTDSDVSMVFDSGVIS*