Scaffold B570J40625_100000790

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000790
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55857
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016938	Metagenome / Metatranscriptome	243	Y
F022591	Metagenome / Metatranscriptome	213	Y
F045570	Metagenome / Metatranscriptome	152	Y
F056351	Metagenome	137	Y
F061574	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000007901	F045570	GGAG	MATRRNFFKYLGLAGGVAGGGIVAAAAVLPDADKCKAIEEIKAAGYNGKLNIGTEYGELASPDGTISCGPKFVPGTQKHVTASMTVGPDGEMYLMTNGKWRRIVTE*
B570J40625_10000079010	F022591	N/A	MKSENTIVKIGDVVKSLDFVGINDCYYVGLVVGISKMDGTFRAKTIKRVWQGQLDKKFPSDFFTAPLPGNSFFDDMAEEKGVDSRVQVVA*
B570J40625_10000079012	F016938	AGGAG	MRKQTETLLSEAIDLVNGVDHVLANTMTQYDLSAKDCYNMAEKLERACHALLVVGDRKTQQDLNKIPMGEGVPF*
B570J40625_10000079037	F056351	N/A	MQLKKIEKKVYALAETWVGEKHIPSMIRQLNKAFKSYIVCFSSERFDDEYYPDHNVIVNGHYCVRISDIIPEHIYICLNFPEDSKKAIITEEGARNLAIKIIRAIHHEYRHKHQQKQRPLLLQKEYKPKPKQNKMKAMYYGNPDELDAHAYETQAEKFDINKLRKAHKIGWRECEAIFMYRKHFRKQDPKVWKKFLKKVYRLNAN*
B570J40625_10000079044	F061574	GGAG	MFSFKDYIPLLTEEKKPARGILHLPHPSESAFHNRRGAVGSTLSKIQNVINGKAPLTRKIDDRMSFQAIRDEQGRIGVKYKGQGATYNFSPEDIKKQHSEKPYIAGPLLNLHKHIHKILPEGPGEYQGGYLSSLNDRTEEDGKIGHKPNTIRYSVDKNSTEGKKLAKAPISVVVHSRIDASGKASPLEAGALKEHPDVHVMSHVVSDEERKIPAASKRKALEHIAAAKKLAKDQSTNHHEGHEETLLRYANSTVDTGEKPSAKGYTKFLQQYHQKKIDKVKTDKAKAQKTETMRAAINHVNDNLDKFDKTFEIHHHIHQATQAVANTLSKTAHGGYSHHIDGQEAAGEGFVSGGMKFVPRAFTEANRKRSAEFKAAKEQKSVL*