Scaffold B570J40625_100000633

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000633
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60359
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (29.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039101	Metagenome / Metatranscriptome	164	Y
F049574	Metagenome	146	Y
F066738	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000063370	F039101	N/A	MAVIATVDKFGITFADAYHKVTRLTYESTDQKTYVYAAPAEPSVDADGNPVPPMPTPPTEAWVKKNFCHYEVATYASEETREAHAEPIYRTHFSFEPVLEAESADIIVQAYDHLKAQAGYEDAVDC*
B570J40625_10000063374	F066738	N/A	MTRTIFLLVAGITVGALIAKQKEAPAPVDPVDLIIEKSKQTMQQASQVSAKVDKQVSAKIGEMKQTIEVLEEEKEQLVEQVTVMKNEITTIKSAPVQPFDVLAIGVSDSADRK*
B570J40625_10000063375	F049574	N/A	MYSQSVYPIQRIENNDTVVVMTKAQAVAMNKRFLSMDSTIKSYDEAYKFKYHQLHQARQTMVFQDSLIGDLNRQLLVKPAFKKMTQQDVLMSSYFILFTTALLYMNFK*