Scaffold B570J40625_100000518

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000518
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65060
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (84.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009327	Metagenome / Metatranscriptome	319	Y
F010448	Metagenome / Metatranscriptome	303	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y
F055682	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000051820	F014843	N/A	MTSRKEADAKQWLQSHGIINYDDLIDSSFELAGEDLKKRQFVISRSRAPIEMYVDADPTMCAWVFEEQRVPAILFSHPNFAAVENRPDAPKKVRRWSDIEEAINKVNIARSEQAQRPKDTVAELWSD*
B570J40625_10000051823	F019092	AGGAG	MSNVPILGEKKMDNEPMFRLLYCLVCQSLDELPPYDGDPEQDHLLAIACEAHVFPSGEPHKGKLFVLPLRAWAKTESKKEIVRQIKGGGSKGLAEVDDTFYDSRSMFLEDAMKCYQQHNKPKDGCSDWQIKEKLLIPNTAKERKAEGMGRYQDEAGPKTYLCNFCPVSIAVNQRKQKLLGLN*
B570J40625_10000051853	F010448	AGAAG	MKNGDISNVSSPQVVCVTDVALKLKEEVSKRLLVKKTSFAVGDIDLLAANKLWHLSNNYAFSLELAGFESEGWTEELLDKAFEKLERRVVNPFNYWQLYEDPHELVGALPYRANLKAVIDVPSRVAMYGSAGVQLDNI*
B570J40625_10000051855	F055682	GGGGG	MYDINTLSPLKKHWLLRTSNIPRRFIGLEPSDITEKVGSFPGEVSSWVDDVTSGQVIKSIGNIGVNGVGLVFDGGPGLGKTTHAVVAAMEIVRNLPDDDALASKLLGLNSTEYGLKFRPVYYMTYPEFLSRKKSTFDMDGEDKREMSYELDGFHGRCRFDWLNVRVLILDDLGKEYGSKYDDTSFDEILRLRYDKGLPTIVTTNVRLENWESQYSEAMASFANEAFIRVPILGSDLRGAQ
B570J40625_10000051882	F009327	GAG	MRGNKVQGRFKIDFESKSMDEGMVDDLRDPVGTTVSWWVWDQDYLDANPNLVVDDIYDVSSTTPGEGRRWKNPFELPVIMAQQMRSTNVMNERGFYVTDTLRLVVSVSDVNILLPDMITNPTTHIKDRIAFQQKVFVPTRVMPRGRYKERYSVVTIDCNQVNAEELVNDPQFQSYASPSVGSGNGVLGYGVGLYGSYGYGR*