Scaffold B570J40625_100000341

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000341
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76102
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (74.34%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F003688	Metagenome / Metatranscriptome	473	Y
F004092	Metagenome / Metatranscriptome	453	Y
F004405	Metagenome / Metatranscriptome	439	Y
F006844	Metagenome / Metatranscriptome	363	Y
F006885	Metagenome / Metatranscriptome	362	Y
F009882	Metagenome / Metatranscriptome	311	Y
F010599	Metagenome / Metatranscriptome	301	Y
F014250	Metagenome / Metatranscriptome	264	Y
F018928	Metagenome / Metatranscriptome	232	Y
F019826	Metagenome / Metatranscriptome	227	N
F020851	Metagenome / Metatranscriptome	221	Y
F032149	Metagenome	180	Y
F034550	Metagenome / Metatranscriptome	174	N
F045545	Metagenome / Metatranscriptome	152	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000341101	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFVYETDTEDEDVIFNEVSNQLSIVPNLVEKNEEE*
B570J40625_100000341104	F014250	GAGG	MNNMTLAPRLQKLVDLGESGTDILHGELKNLMLNAETEYLRYQKIEEDTDYDDAMDSMERKYWEGMLDAYSTVYQLTYELAFAISDRTKTNG*
B570J40625_100000341105	F090399	GAGG	MNQMNSFIEYMKIHEISLMQDLEKIDYVNAHHFYRTKEAEIYNTRHLLSVAEGMIKE*
B570J40625_100000341111	F009882	GAGG	MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTELEWDLHSSRAKEDLLRNLQGTVSQLEDSIVEWYDPNYSKEEVLVALCELFGVNPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVSIEAELSSYDYDADLNVDEVSLEDHY*
B570J40625_100000341113	F000684	N/A	IQMTLGGYTYQLGDLFTTSKTGITGRIVKFSPINSKLTRVSLQLANGSRRLAMVSTTK*
B570J40625_10000034126	F004092	AGGA	MSEQNFSTYEGKWPCKTCQEIVKVLRFYAKTGDATWMCSQKHISKVNLIPIKKKKRDYLK
B570J40625_1000003414	F004405	GGAG	MNSCEVTDFMYPMKADVYFPILTQGEYGQPKKDWVYDRTIICNATPVGGLGTEDIKPEAFLQYENKLIARTQNDPRLSSNNANNATTNILVTNVRDASDNTIYKETAGPRSGRGTIYEIATVEPFTGPFGSIEYYKMLWRRTENQTVGD*
B570J40625_10000034142	F034550	AGGAG	MKKLKEWGMAILNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFATIGIRKEEE*
B570J40625_10000034163	F006885	N/A	MKYLLVVGLTLLAYGSIIKILNKKRISFLKKIKYRQSNIYEMIKDVIPKQRFEKPKFITQSQKHVQKNMLKVVIEKDKAYWILDNVFYTANTINGRIDEDTAKPLDIENMSTKELDNMLSILDDLKQGVGPDDSGSAGNKRV*
B570J40625_10000034165	F018928	AGGAG	MIIRSLNTMEKIVSKNENLIWHAWDVIDLKESDTAKTSPAGIRVKNKWYLHRIYKPGRNGWDIPNKYKD*
B570J40625_10000034168	F003688	N/A	MYTDAMRMAVHSILPPKGFGVEIIDNEHFLTVKLDEKKFLHMGHDDKISALQYVVKLKKVLEECGAIVLVTREAIK*
B570J40625_10000034169	F045545	GAGG	MIKQIILFFICKIKLHNLVDAGSCPFTGKNYAACLRCGVTIVK*
B570J40625_10000034170	F032149	GGAG	MKKKIIILISLAISVLVAISLFFAAKLSQLSDLELFDIEEDN*
B570J40625_10000034173	F010599	N/A	MEIMFLVFFATLSFSFGLSYWATFSKLKKSNLLLAELFIKNRALEELNSQANSGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSEELNSKGLKIYSEKLLALLPENNTK*
B570J40625_10000034192	F020851	GAG	LERKSMSKDLVDLAISMTEIDTGIELSPQERETMKQRILAKVEDANR*
B570J40625_10000034199	F019826	GGA	MRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGAPHIIYTRANEVLEAMQYNKEVEQLDRGAYYGNGR*