Scaffold B570J40625_100000211

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000211
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92351
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (16.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F030735	Metagenome / Metatranscriptome	184	Y
F052406	Metagenome	142	Y
F053077	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000021138	F052406	N/A	MKLRVDLYSFLASDAGELTKMQTRLNQWMTKGILKKYEIHTAGEYIVFNVCRVKEQGE*
B570J40625_10000021141	F030735	N/A	MVKVIFIWLLLTGQVKYQQTMDGRKQYALFFEDGKVVDYATKHEIYEYIETGTFEYDEDLGR*
B570J40625_10000021158	F053077	N/A	MLYQLPNGKVIFLTIEQYLDLTDEDEQYLMSLDAGEHALNPFLESAVLQNTKEKYYDFDYLPDDESCDDIISDDTPFDDIIDLTGPLDI*
B570J40625_10000021160	F000716	N/A	MEKLKQDVKNYQLSAGKMYMQYETDGYSQYQNYLYKRALYGLDALTQQELATMCSKKKQRIVNVYKRAQIVLNKFKQQVTIQYSNFIFKTLFPKSPLTELLIADTETDDKFKNTLTFKDLGINKEQIITIFMAEGILPKNFLSLDKDPNQLPRLRNASK*