Scaffold B570J40625_100000124

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000124
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109802
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 118 (73.75%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F004405	Metagenome / Metatranscriptome	439	Y
F007112	Metagenome	357	Y
F008305	Metagenome / Metatranscriptome	335	Y
F034550	Metagenome / Metatranscriptome	174	N
F097334	Metagenome	104	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000124101	F034550	AGGAG	MKKLKQWGMAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFATIGIRKEDE*
B570J40625_10000012411	F000808	AGGA	MDKEYTYSLTTSYDGELINTLRVSDMLTAVDAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
B570J40625_10000012412	F100416	AGAAGG	MGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL*
B570J40625_100000124155	F007112	GGA	VHTLHYIAVEADSKQEAFDKVVVSLQPNEDGYRLADWSDWHVVGGGRWSSNANKENNIMAGYNDDPTDVLGFSEDKEKFQEALISVGKWKSEAMNRAIKQFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKETATMLMGGWTPDSGLYDLDENIAEVTYLKERLDKPEQAVRQYLVPVDFHF*
B570J40625_100000124158	F008305	GGAGG	MLGYTYKDIQAFGDSLTVAIDTATDPKIKQGLLTIWDFFEGLLAEGYIDEGVM*
B570J40625_1000001243	F004132	AGGA	MSEVMLQDQLTVSYNPNLLVTYKYIPELTPSHGVQLGEEPAATFMTDKVTDIEWQLHKSRSYADQLAAKRLDINWLEEQIVEWYDPNYTKEEVLQAIIEHFGFNPTKQIEVQGTVSFSGTINVPVSELDDFDLSNVTIDVDLNSYEYDADLNVDEVSLEDHY*
B570J40625_10000012432	F097334	AGG	MPDVLLNNDDITVLGPPETVELLIDIGPEGTRGSQVFVGVGNPNIIEIGQTPLLNDLYINTSPGADYGYLYQYVSQPGSNTWIEILELNPTIYSKKFLTTYVNGEASITIPVSDIVISTATPLTAENFSVQYSIVNDNPVAASMSIPALVGDGEDLVINFKAVEHRTDVDSGPYGDWAVLEGQVTTHLFITIVDEES*
B570J40625_1000001245	F000684	AGGA	MTLGGYTYQLGDLFTTSKTGVTGRIVKFAPINSKLTRVSLQLANGSRRLAMVSTTK*
B570J40625_10000012467	F004405	AGGAG	VEDCTTTDFLYPMKADLYYPIITQTQYGQATREWFYDRTIICNATSIGGAGTEQIKPEAFLQHENKLIARTKTDPRTSSTQTDNAITNILVTNIRNANDEIIYKETAGPRSGRGTIYEVATVDPFSGPFGSVEYFKILLRRTENQTITD*
B570J40625_1000001249	F003393	GAGG	MIDLENDDTIQIVDYVKIDVLTAGQLMVDDCILIGDEVVSIVSIISLPDGYTLEVVNDFGEREIIEVGEYDQFDLMMLQ*