Scaffold B570J40625_100000118

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000118
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110771
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (80.12%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001562	Metagenome / Metatranscriptome	670	Y
F011394	Metagenome / Metatranscriptome	291	Y
F013527	Metagenome / Metatranscriptome	270	Y
F021988	Metagenome / Metatranscriptome	216	Y
F023344	Metagenome / Metatranscriptome	210	Y
F036238	Metagenome	170	Y
F037095	Metagenome / Metatranscriptome	168	Y
F063705	Metagenome / Metatranscriptome	129	Y
F072349	Metagenome / Metatranscriptome	121	Y
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000011810	F000376	GGAG	MSEYQEKAKECKCCTKHVPLPTKMKEYNNIIMCPTTYYNVIEYKRIWDSYGSRPAGSVRKHFSEYVQSIVESSIDTQN*
B570J40625_100000118111	F000311	N/A	MYFELTAPSRVAFARAIWDAEITGLDPEAMSALTFNIGTGSIEKVSRIRDKYNLIESYVSDSKTTGY*
B570J40625_100000118112	F001043	AGGAG	MSDYKDGFEDGYKFAREEIIEKLSEIDIADIDTWILDRLSDMIEGGTL*
B570J40625_100000118114	F036238	GGCGG	MGDRANFGFKQSNGETIVLYGHWAGHGMLERLADAVEAARSRWGDESYATRIAVSHLVGEQWQDTTGWGLSVNNILDNEHKIPVIDWNTQTFSLHEEAPWSESTEYKVRGMQDEPIFKMTLDSFINKYSRVNA*
B570J40625_100000118116	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEYMFMQFAPDSLKQSYNEYYGYIEGDEFLL*
B570J40625_100000118120	F063705	AGGAG	MTKSSYFLEYMKLHLISLNQDWEDSKNSVPLNEDEYDPSDDYYVGATEAVEHLLSVATDIMNSSNERYE*
B570J40625_100000118122	F000263	GAGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARDEA*
B570J40625_10000011813	F000369	AGAAG	MSEIEPAVQFDKMNRVVSELLKGNSATQIASITGLTRKEVLEHIDEWKSIVHNDTNVRDRAREALLGADQHYDMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIETKRIAMLQSVGVLENNEMASQILETERKQEMLVGILKEVTSSCNHCKIEVAKRLSQITGIVEPIIILEKTSDV*
B570J40625_100000118145	F021988	GGA	MSMDGTGMAPPPNGAAAGAVTSREATRKNPRQGLKIDTNKHGIRREINTAQRPPKKIGRKKI*
B570J40625_100000118160	F072349	GGAG	MEKVLCYSCNKTKASLSLKRSTLLPINLLLCETCILNKLEPRWVVILTGRQYGHDTVKDYISKKRYHGEDIKASELLV*
B570J40625_100000118162	F011394	N/A	MANFINKDKDHFKYGINEWTGEANKPVFYTKEMAQKVRELKSPAHDLQMDIIKYPEFLAIRLYENNFSQYDGSMRMRVIDYIEMVKRILESYGVRVELEGKPGGRTR*
B570J40625_10000011845	F103268	GGAGG	MTNYGIDAMYEIRKHLWQELLSNNIIDQNAYYSDNLGESIIPIIPVQQAPEMNQFLSGKTHIVYDKIGSTYEENWLICCEKISFTIYSVDFAEINIIRNMMMDVFRRMDDSARDLNKSRSTDKIIFHNTLILEMSPTEPSTELAGFLAADVIIEVKYSRTVGPKGRFD*
B570J40625_10000011874	F037095	GGAG	MAIKNFDKADLNKDGKVTMQEQILSALGSYGRAFLAAAMALYMTGNTDPKDLVAAGFAAIAPVILKALSPSDHSFGFKSK*
B570J40625_10000011894	F013527	AGGAG	MAVYEFNAFINVEAESYDDAIDTFQFQLKYGINQNNVYVADIRDLELSE*
B570J40625_10000011895	F001562	GGAG	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHADYLAEMENE*