Scaffold B570J40625_100000108

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000108
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113722
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (17.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021755	Metagenome / Metatranscriptome	217	Y
F026824	Metagenome / Metatranscriptome	196	Y
F026863	Metagenome / Metatranscriptome	196	Y
F034547	Metagenome / Metatranscriptome	174	Y
F039601	Metagenome / Metatranscriptome	163	N
F044492	Metagenome	154	Y
F078708	Metagenome	116	N
F088761	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000010814	F039601	N/A	MLSPRLTDCVVDASIPATLLQIDERLTYWANRQYNNIIFSMNNYIPGEIIDDLLHYKQILTYRLCTPNYAMVCGLPTTSQVVSRVKVLIHK*
B570J40625_10000010826	F026863	N/A	MAKREVKIEKIPLDKLIDTLVDLYNKGIDYIDVVGVPGKEFDRMGIAFTGEYMTDQGKKNFEGIDLEVEIRTEKLTDDDLNELI*
B570J40625_10000010830	F026824	N/A	MIAVVIWGFANFEEWEFGIEFLPKDYNSFELGISNRNYVTDDGGLEQELRIGLLIFSVIFLFRRFGA*
B570J40625_10000010831	F088761	N/A	MTKNYVINNGSFTANGNFSGYTALGERVHIFGRQMEALSWKTNADVSFPFYAIGQMKQINQLNEKGETTGTADRLTALSAFKSRDEIKQAHADSTLLDIEIQQEIKAQASSAGLTESAINNLLSVAF*
B570J40625_10000010861	F021755	AGCAG	MKRTIIKLHNKKFADLVDHNVRECIQKKENYEIEYRGKSMILTPEELKTKCVGRQYIAEPKFGDKPYHLLSYLWEPTKISEK*
B570J40625_10000010862	F044492	N/A	MSNDEQVVVSINRQPSFTEIWHEGSVTYNETEYMFWLINPRGLDDQGREYEMEIRWWFKQVPKELRSMSEQIIKDFKENRHDSPNSTRDSKSI*
B570J40625_10000010863	F078708	N/A	MIVQTVHEILNPFDVEVKQLGYGVALFMIVGSIHSNPQFIVRFYNTGQLRTVDQNDLSVYGNPTAGEDLIPDPDVVSKLPPNARRNMDFLNKQKDK*
B570J40625_10000010879	F034547	N/A	MKSAKITSKQAKSVKPMTAGKAKGSGTPRPAPKVAPPKPINGNYMKEADNPRRLQSKMWPLKQKRLSK*