Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000105 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000105 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	114550
Total Scaffold Genes	145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (17.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

114550

Total Scaffold Genes

145 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (17.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F003038	Metagenome / Metatranscriptome	511	Y
F025467	Metagenome	201	Y
F054451	Metagenome / Metatranscriptome	140	Y
F060624	Metagenome / Metatranscriptome	132	N
F076922	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000105126	F025467	GAG	VVKKENISIILTLCLGVMCFVLLIRDPKQVYPISTQKTIEKRIEGKETIIKEKGKVIDNSKLIINELNHGLHDLQSQLDAVKNSRDTFSIVQIQDTMIHTLYRRDKEKDLIISSQDTIITAQRYIINSKDTIISSLTLDIKKIKRQRNWSYILNGILAGALILKP*
B570J40625_100000105128	F076922	N/A	MDTTSVANGAQDFGVFAQLGNYGPAGLAVLALGYVAWIFIKRHLAEKDRLKEELIKTAKKKTRTTKSK*
B570J40625_10000010553	F003038	N/A	MALSTTDLGTGGSGMAKTIAPGNHTLKINSIVLEDFTFIDGAKHMILNVETEPLEGFEGFMIDKDDASKGHYAGQIGRIKASQYAFADGETKTGIKIQRDRSVLIFLQNLSKALGVSDWFTSQDGKHDTIEDFVSAFNKSGVYKDIYLDFCIAGKEYVGKTGYTNYDMYLPKADRGTYVYTETEGDKLMTYNEALHLKKAEVKEVNKFGDDDDNLSIPSKTSSDFSLD*
B570J40625_10000010563	F060624	AGAAGG	MFLAIEFTDKDGSYIEHLNVTHITRISFVNAMNSDAGTKIHLRTGEVLTTPAPMDLISQKIDECWKSAATLVIFNILAEKAKLRSDADNEGSLETE*
B570J40625_10000010578	F054451	N/A	MKYITKAVIKLSEIPEHLQQNEVLQGHKLNTYGEFHIDDSEQDDLVLWLLSEYPTIKRKISFLIHFNK*
B570J40625_10000010590	F000716	N/A	MEKLKEEIRNYQMRSQTVTSYQQDRYNQYQNYLYKRALYGLSALTQDELTTMCSKKKQRVINVYKKAQVVINKLKQQTTISYTNFIFETLFPKSPITQALLAETETDDALINKLNFKDLGIEKSQIITIFIAEGVLPKNFLSLDGPQNQLPRLRNDKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000105

Overview

Ecosystem & Geography

Associated Families

Sequences