Scaffold B570J40625_100000092

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000092
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118514
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 134 (72.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000684	Metagenome / Metatranscriptome	938	Y
F005092	Metagenome / Metatranscriptome	412	Y
F014250	Metagenome / Metatranscriptome	264	Y
F071231	Metagenome / Metatranscriptome	122	N
F087107	Metagenome / Metatranscriptome	110	N
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000092164	F014250	GAGG	MITTELAPHLQKLVDLGESGTDILHGELKNLMYEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFAISDRTKKNA*
B570J40625_10000009217	F093845	GGA	MINVTLTTTTGSTKGMSFDTKGDVLVFIEKMTHALPIGTVLNIDAPLIGIHSGWIQGKKINN*
B570J40625_100000092174	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIASFEPMSNKLTRVSLVLANGSRRLAMVKTSK*
B570J40625_100000092181	F005092	AGGA	MNRKKEKMDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAY*
B570J40625_10000009225	F087107	N/A	LVNFLYHVRFVLYGIIFLLANTLVCPIPTDPGISQFLWYNHSMPIHSSLAFGADPVTMQWSVVRGDTGTLRVEFYEDNEVDYYDTTGWIFRATAYDQSGNVLDALDCEPGDGFVDITAYPSVTKNWGLKYASVVAQLPFDLQVIIPQEIEDTVWTPVIGTIQVLGDVTPGGTL*
B570J40625_1000000925	F005092	AGGA	MNRKKEKMDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAN*
B570J40625_1000000927	F071231	GAG	MMTRKDYVKTAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANKFALACYKKIEVDA*
B570J40625_10000009294	F000264	AGG	LTNNAMAAKLYTSEVFMRKRYLMDKKTPDEIAKECGVSVETIYVYLAKFGLRKSKR*