Scaffold B570J40625_100000084

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000084
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120453
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (16.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F002332	Metagenome / Metatranscriptome	569	Y
F004953	Metagenome / Metatranscriptome	417	Y
F010462	Metagenome / Metatranscriptome	303	Y
F048248	Metagenome / Metatranscriptome	148	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000084119	F004953	GAG	MMLVEASWQDKTTFRMIPISEHCPYVECIFDPESKVFVIVSKIKKTSLHMLPKLDEYGIAISGNRGAKQERHKIEVFQEFYVEDVVAIEELIKILAVNSKFDYKKFMTDKA*
B570J40625_10000008438	F002332	N/A	MSAVNQVQKKVIMSKNGIIKYQILTHCYINNIALSDSDFECLTLLTIIGPIELSSFCFEASDEHMIFKSEQTVRNCINKCEKQSLIIKDSKNKKVIMINPDLKIQSEGSILLDYKFFAK*
B570J40625_10000008473	F048248	N/A	MRISVTYENSDVAKALGRIIKDSNSEEFVKLITPMICTSQYATEYFFKLMLGNKLPDVIPDGTLCKVSVNSLSYNSNKEAIKERFGDEDGKVVVTIKEFRGYHEYSQYHIEYTDVLDNGTTKKDTVYVQHKDLEVIEEF*
B570J40625_10000008474	F010462	N/A	MLYQLPNGKVVYLSIEEYLNLSDEDIQYLMSIDYGEYMPDPFADSAINKKSKEEYYDFEYYPQDDEAINNIAADDIPFDDIIDLSDNLDI*
B570J40625_10000008476	F000716	AGG	MQYEQDTYNSYQNYLYKRALYGIQAIDEKELTTMCSKKKQRIVNVYKRAQSVLNIAKQKVTIHYTNLLFKQLFPTSPFTEMLLKESETDISFKNTLTFKDLNMKKEDIIFIFMSEGILPKNFLNLTKEPVTLPRLKNEKT*
B570J40625_10000008494	F071153	N/A	MFSGKFIKKEGKLVYSRIQDKLAYEIFVEGLSENQEIEMFLDLIAHDHTKAQLAKVHACIRELAKESGYTFEEMKLVIKEQSGLTGKSFGECSKSDLMLAIEACIQIGKDQFNINL*