Scaffold B570J40625_100000038

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000038
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 155491
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (12.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002943	Metagenome	518	Y
F004155	Metagenome	450	Y
F039143	Metagenome	164	Y
F076086	Metagenome	118	Y
F099309	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000038118	F004155	N/A	MKSDILLSLIKEVVKNEVKAQVKEEVAKLIKSGAVTLNLPKKSTAPTLKEAIKSVDPFEAATSALQQSRKVVQPQPKPQIKKEFSKDPMINEILNMTQPFSAEQRKEGAQSVGSVLDMIKPELRVDESDWETMDFRESNIPQNIPQQLESTGDGLQDATIKALTRDYSELVKRFK*
B570J40625_100000038124	F076086	N/A	MEILLGIIIVLFLTALYIVRNLLTKLEKYEEFIERETQRNQALLEALREIDSREMFEKDDEVGSIFYQIKETIERFKQFN*
B570J40625_10000003850	F002943	N/A	MKRSLLDITQKISRKPADTELTPKDLNHPTYSIWEANGWRFVELLREIEYRTTQDRLRVIINTQHISAEDYIIEEGSEGLLIKFIKNNFEFGLDTTDYIEITGDIERYA*
B570J40625_10000003865	F099309	N/A	MSNYRTYNAKLVTSGSASLIDRVWGVLPVSGVTGTITLEGGTTISLAHLTAGEPFPCYVKSIAVTNGGSVYVLA*
B570J40625_10000003877	F039143	AGAAGG	VGKCFIKQITNIKLYMKHIVVSGCSFTNNYRCNLEDEKRWERDPIENWTWAHWLQENLKETHELHNYGTITNDNKTIARSIIYKVSDLLKQGVDPNDISVIAQWTTLTRNSFFISPEKYDNNKNPAISYIKHNNSWVHSNDYLINGKEKTTPYEHGYFHLTGGFNPTNNPINIDPVTFAWLDKVMTYDERYFEWFEYILLLLNFLEVNGITKIKFFNMNNNFSKNYLREGRTPPYYHTPTDKSVYECIIQNRDICNTWEQKELEFDNAYVKTYADKIDFSKYFWFFEENLVSLYGGIIEWSIRNFNLELETDNLPKVLWREMNGMSIDEQKKYLEKSWYGHTSSILTHKFVNDVVLNWKIFN*