Scaffold B570J40625_100000036

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100000036
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158798
• Total Scaffold Genes: 223
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 185 (82.96%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F012658	Metagenome / Metatranscriptome	278	Y
F037567	Metagenome / Metatranscriptome	167	N
F040587	Metagenome	161	Y
F053106	Metagenome / Metatranscriptome	141	Y
F059898	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000036176	F040587	AGGA	MLQWVGVLIALLGLAYNGVKDYQSGNIKIPELTQQKELTKVVYPVQYCLMAYDPNVNKVFYQHENGQWYDFPPEQRKYSTVSSKR*
B570J40625_100000036177	F053106	GGAG	MAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDTIDEHFYVDEQGYRDYISATPKTNVIATKSIVRAAGWELSRDDD*
B570J40625_100000036179	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPPTCVYLGDGCYAEQTEKMYPNVRPAGMQNLITEKNRIRAMILEAIRKEKSIRWHERGDWFKDGQLDLDYVANVTWACESILADGTSLPDMWFYTHIYDSRLVAMEKYMNVYASVHNDNDMNEAKAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDTKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH*
B570J40625_100000036183	F012108	AGG	MISVSLTVREALWILSKIESYDTIYDKISIAFEDALKVNRNKTVTITGGMTLDNRIYCIKAIRTHTGWGLKEAKDWSDVLVGGWKYDTFVPATPGTKNSVTLSTPEAAENLLRDLVDKGCEGFLS*
B570J40625_100000036187	F059898	AGGA	MNEDRTKAMIYILSFFKNRMAAVNKHNVDKAKELIGLHEISVSELVDKYVDLVYKNS*
B570J40625_100000036188	F037567	GGGGG	MEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHKDDPVSEHILICEESPGIVDRMDAPWWMPYEGQPKPKRPENDYPKDYPS*
B570J40625_100000036211	F012658	AGGA	MFGTAYANRQNSLNTIFSSMIAGKYTSVIDPKGRVYAGLVNGIMREDGSGRNWIVTITNKTTSEKVFIHAT*