NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24696J40584_12258322

Scaffold JGI24696J40584_12258322


Overview

Basic Information
Taxon OID3300002834 Open in IMG/M
Scaffold IDJGI24696J40584_12258322 Open in IMG/M
Source Dataset NameCornitermes sp. P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000018Metagenome6467Y
F022214Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
JGI24696J40584_122583221F000018N/AIKGQIEVTKRHGRRRKKLLDLKNRRGYCELKEEALDRSMWRHRFARGFGPVF*
JGI24696J40584_122583222F022214N/ARLEAAEMRFLRSVTGYTRLDKIRSEVIRKEPKIYGIQDVRLKYKQNWINHLERVDNTRLPKHALNFKPRGRRDRGRPTKRWQCVDAGTGQTI*

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