Scaffold Iso3TCLC_10011862

Overview

Basic Information

• Taxon OID: 3300002821
• Scaffold ID: Iso3TCLC_10011862
• Source Dataset Name: Iso-alkanes.Hi.seq-Iso3T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18699
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Athabasca Oil Sands, Alberta Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089118	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Iso3TCLC_1001186218	F089118	N/A	VTRLVWVIIFAVLVGTLVLITLKSLPGTRVSGQLAEVQRAHDILSRRFPDSRFRIQFSAPDSSVRNLVVTIQPGRADSASIATQLDSAESIVRRTVDLSRYDSLVMAVFDRVYRGVPVR*