Scaffold s1d14p1_10937184

Overview

Basic Information

• Taxon OID: 3300002780
• Scaffold ID: s1d14p1_10937184
• Source Dataset Name: Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Piglet Fecal → Piglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet

Source Dataset Sampling Location

• Location Name: University of California, Davis, USA
• Coordinates
  • Lat. (^o): 38.53
  • Long. (^o): -121.76

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099269	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
s1d14p1_109371841	F099269	N/A	VSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSNGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*