Scaffold s1d14p1_10226845

Overview

Basic Information

• Taxon OID: 3300002780
• Scaffold ID: s1d14p1_10226845
• Source Dataset Name: Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3359
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Piglet Fecal → Piglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet

Source Dataset Sampling Location

• Location Name: University of California, Davis, USA
• Coordinates
  • Lat. (^o): 38.53
  • Long. (^o): -121.76

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099451	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
s1d14p1_102268456	F099451	AGGAG	MEIKNVGQLRKIIENLSDDYEIEMRVRRKLSDEELKECRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN*