NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005234J37281_1010587

Scaffold Ga0005234J37281_1010587


Overview

Basic Information
Taxon OID3300002776 Open in IMG/M
Scaffold IDGa0005234J37281_1010587 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031514Metagenome / Metatranscriptome182Y
F099359Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0005234J37281_10105871F031514N/ALNEDFGLYVERPFYIVSQMAAHRYLDVINNRNFVIKTQNGRNTQIWWFDQKSLTIRTKLNNQSWDIKSAGKTNEMQIWSTNSGWFQVFKYADEHFLNF*
Ga0005234J37281_10105872F099359AGGAMDVAGGQDSESRNVIMYKRHGKINQQWDIVYADEYPEEPKKGEMNEFFGLYVERPFYIVSKLGEHRYLDLLNNRNMVIKTQNGRNTQMWWFDQKSYTIRTKLNN*

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