Scaffold JGI25136J39404_1098330

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1098330
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F060967	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10983301	F005148	AGGAG	LKQKKYEEHLKKTLPESEEVECKNCGLKFYDEYNLICLGALDMCLLCANRNLDKDKIERAYNVKQ*
JGI25136J39404_10983302	F009404	GAGG	MSSNNEPEEIQPKGESLVKYCAICGVELEDTVLTNRYWKCLSCESIFQVKVRAET*
JGI25136J39404_10983303	F060967	GAG	MNKSRVARDLWRKVFNDNIIDLKDGDARKQVVSEFLADPVNIKAGWKKKDARFMR