Scaffold JGI25136J39404_1065772

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1065772
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035969	Metagenome / Metatranscriptome	171	Y
F068118	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10657721	F035969	GAGG	VATRHTYATSDDLRDYLAGTSYSSAWTSDAGAIRRILEASSRRIDDYCGGGTFGPQTQTRFYD
JGI25136J39404_10657722	F068118	GAG	MLSPRRPLGLWGGLNMPKATCVQNVTFGATGTTYVSGEEYEVPAETLKRYPDYFKRAAAPKTKKAETEENK*