Scaffold JGI25136J39404_1009352

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1009352
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1728
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001922	Metagenome	617	Y
F014859	Metagenome	259	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10093521	F000704	N/A	MPHTTGEILPSRVKAVITYDVANYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPVVFSDTDSGLLLNEGNDATFSQTYTFLPDMTAVIYAIHLNIPAAITCSSFSSGTLNVGALHIKITERSTDNRLLYENTFQSGAANLTGTGTSLHWFTRDIVETIQVTKGNPIDILVELVTVVTGTNTRQEGYCPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSLLGQ*
JGI25136J39404_10093522	F014859	AGG	LVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKNKTVDTEETGNQIDNLINNAPRILDEVNKEITAQREQGVTDDQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI*
JGI25136J39404_10093523	F001922	GGA	MVIQKLLIEEGLKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATISGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTIAVLIVVVEAMQYDKMLKEKGQKPNVTSLAVFGVIALGLSLITFPTIIQKLKERRILNAS*