Scaffold JGI25136J39404

Basic Information
Taxon OID	3300002760 Open in IMG/M
Scaffold ID	JGI25136J39404_1006281 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002760 Open in IMG/M

Scaffold ID

JGI25136J39404_1006281 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_1000

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2054
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2054

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	1000
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

1000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y
F013646	Metagenome / Metatranscriptome	269	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10062811	F013646	N/A	PXNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHTVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN*
JGI25136J39404_10062812	F000704	AGGTGG	MPHENGDIQPSQVKSQPVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFDQTYTLDPDMTAVIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVNKGNPIDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKAFYESGISLHLHPDLSHADGVFKYSKQRVSLLGQ*
JGI25136J39404_10062813	F000730	GAG	LVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQTAAGVSQDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
JGI25136J39404_10062814	F001992	AGG	VVQKLLLEEGLRRTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATITGGSWLNIVAGFFNIKFPDTLPEWLTKLFTTGWNGVAFWQILQITAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLVIALALSLMVFPQTIQKFKEMQILSKAPRTEVTKGFGGEPL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25136J39404_1006281

Overview

Ecosystem & Geography

Associated Families

Sequences