Scaffold JGI25136J39404_1005364

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1005364
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2189
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000874	Metagenome / Metatranscriptome	851	Y
F002453	Metagenome / Metatranscriptome	558	Y
F011590	Metagenome / Metatranscriptome	289	Y
F014983	Metagenome / Metatranscriptome	258	Y
F037763	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10053642	F037763	N/A	MSRKITLNIKGESSKQYTTLVLELNVMAKSWNKFGVDITLPGQEKIIKWGQKIGKDVPTEAPN*
JGI25136J39404_10053644	F011590	AGGAG	MAYKETCSLCKGNGYITMVIKEQDEIKQCWLCESKGEKEYSQAEVDDFIYKTYYKK*
JGI25136J39404_10053646	F014983	GGA	MANLFTNEKETKRAIKAAVDQANKVRTHCVICGCTPKPDEWSSQAENCCFDCA*
JGI25136J39404_10053647	F000874	AGG	MKIIMILATGTLLTFPTMEEIKPDCFSQGHAILQKLATYQGPGPEQGWYLNGSRIQVAGFYCQ*
JGI25136J39404_10053648	F002453	N/A	YECSRDAHVESIKLMSKMGYAYVNKYHLGTKYNCRSVYIY*