Scaffold JGI25136J39404_1005126

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1005126
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050757	Metagenome / Metatranscriptome	145	Y
F100974	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10051261	F100974	N/A	LTLTGVLPAAGEGFTISPDNATLTILQTYSWDNYGGTWAASSDDWDVVPFVPTAIETGQNQPDAGSLTLTGTAPSRTIQQLWYVPSASLALTGFVPADMTGYNFIPDAASLTGFGTTSWEDTTGTWASSSDTWGEGTLXPIXGVTYIFVIDPQGNLVFTPYEPGWPLVSDPTYISEIIMS
JGI25136J39404_10051262	F050757	GAG	MRKKDGTMEYSWSELAYRIDPELSAPEKVYVFDXGNRVXHQAXKRINVKHARNRKKS*