Scaffold JGI25136J39404_1004802

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1004802
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2293
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015147	Metagenome / Metatranscriptome	257	Y
F023712	Metagenome	209	Y
F089035	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10048022	F089035	GAG	MTAYEMANKMIRKPKPNAVKRLEMAQDQARKSKRMVKEALETIRLSKPYKRPEDLPILTEWK*
JGI25136J39404_10048026	F023712	N/A	MRETIKTEKMTYKLTWKDEDTNRVSSKEFTGQSGVDHSAMDDALAMAQVVDGNLWPWSLERDGQEISYGWGGEQLDRGRLFPTCG*
JGI25136J39404_10048027	F015147	N/A	MKKTTKNMKWFINDLGLNELDAWLAIIGGATLTATILVALSGNGPEIMRFWRVFFLNL*