NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25136J39404_1001369

Scaffold JGI25136J39404_1001369


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1001369 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3864
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033590Metagenome / Metatranscriptome177Y
F033600Metagenome / Metatranscriptome177Y
F072246Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10013693F072246N/AMKSNSTTSPVTTDYSQLARWLCLYEAVNIISDKAEKIGHSADCLKPIPINKYINERYHSVLKDVEYEFSNNLHTHHH*
JGI25136J39404_10013695F033600N/AMMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADVAKASPETYNQVKAELVPFPGDHLIEQLGSAYKNVSDATYLLNQLFENPSTHLDEKIVKSATLKLQKIQDLIKSVSEDLDHDETDS*
JGI25136J39404_10013696F033590N/AMGKFENKFLSLLKEDEYGVDAPAVAPAIDAAPEDDQQSFTNALDEPGNASDFEDVVDSNPNEQEELTDLQEWISNIDDVLDYLNGGITSVLGKLRNDNKIGTIFADVSDATKGEVLDVCERLASLNQILKNLYIEKHK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.