Scaffold JGI25136J39404_1000535

Overview

Basic Information

• Taxon OID: 3300002760
• Scaffold ID: JGI25136J39404_1000535
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5902
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F040141	Metagenome	162	Y
F041246	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_100053511	F008596	GGAG	MSGAWDIATATSIGTGVSKTQINGGNNLTKPTQAVNLVELVPYISSSGAMTAGESLAVTLEVDSYSVDLLPKRIIVPPIQSGLGTTISQVNPLLEAYECGTGLQEGATSQFQIYGTNQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETNFTTATTTTGDSFTINDGMWLEDMYVSVFTAVYTVSXSLTGYGSFTSNDFGNSLPLKIPMXPGXASLGATGTQGILALASYHNTHMPMKTSCKISTA
JGI25136J39404_10005352	F040141	N/A	MRCLSHEFIFKTDKCQKGSYLFMQKTRICYYCMRYLKKNYGITESDLLKDKFYKKFISTDKDFLQTIHNF*
JGI25136J39404_10005353	F041246	GAG	MKYVIGITKRFSYTKSENHTKKGRKHFFCYEYSMESGEFKRIRISTIKAIYYKITFIFGLKSKKVTNVYCKDCRKSYDCLVNFWDKNLDCPYC*
JGI25136J39404_10005358	F008691	N/A	MASLAGYNVKEEATEVKKNLFENRDTFVMLVVAGVVGGAITRFVIPKSVTEGSVFSRFKSWFGYDQEEYEEEE*