Scaffold JGI25156J39149_1000042

Overview

Basic Information

• Taxon OID: 3300002705
• Scaffold ID: JGI25156J39149_1000042
• Source Dataset Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105742
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (71.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023378	Metagenome / Metatranscriptome	210	Y
F034241	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25156J39149_100004218	F023378	AGGAG	MSKTYVVSGCGMKFDAALWPVPANVEIHFYFQCMREPQLYKTRTILDKLMLEVGMFPDRVAMPGDMIPSHFVWAHPGEQPASGVFRRQSGQLAMDLAETDASRPVALSHIVKTLSADRARSNTAIHWIVRESEDLAELSGLDCQYPPRLRSGGTDDGDESREMPLSGQMPLRASQRMPLSPMGMGPTEAWPGVRRR*
JGI25156J39149_100004285	F034241	GGA	MSQAKPRQYIGALRAAVSAAKAVNKARAAAYHVLPDGISCKTDWAGWSDPWYDPTPRQQALLDVLQDLLDGGETEVPMIALKTALRLEIRESEIVRSRDNVGTDGESGYFFDDVLHGLYVLDAQETEQVFYSLIDRLMQPRSVRAGPGSR*