NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005228J37280_1008748

Scaffold Ga0005228J37280_1008748


Overview

Basic Information
Taxon OID3300002696 Open in IMG/M
Scaffold IDGa0005228J37280_1008748 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099846Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0005228J37280_10087481F099846N/AAGFSTTDPGAGGNYNPLFGAMAWANFNMEANIFAALPKYVWDFSGWRIFKSKAPELTAVAGAIDGKGGTIEGGAIAAAVKPAVQEITVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNLMLAAKPTDVVATHALEELNLESLDVIVSASAEQAHEAHANVTSLYTPWFAANGAGVQRNGATVHDSTVKSPSGTLGTTDVLTDAVLRETLAEIRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHISTIYGLPFIPSKDIGGSGAGKVDNLYILNTSADKNAPNKPLLGMQILKPIVYYEAGKRQQGYPFINEAFTDRALYNMLGETTCRNFKAQAKIRDIASGI*

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