Scaffold Ga0005228J37280_1005023

Overview

Basic Information

• Taxon OID: 3300002696
• Scaffold ID: Ga0005228J37280_1005023
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_B (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1922
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099846	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0005228J37280_10050232	F099846	AGGAG	MSTYLGLRSIDELVNYTYNRTPDEILKAGFSTTDPGTGGNYNPLFGAMAWANFNMEANIFAALPKYVWDFSGWRIFKSKAPNLTSAAGARDGLGGTIEGGAIAGAIKPAVQEITVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNQMLTAIPTDVVATNALERLNLESLDVIVASNAEQQFEAHANLTDLYNPWKGANGAGVDRNAGAGTWDSTVKSPSGTLGTADVLTDAVLRDTLADIRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHISTIYGLPFIPSKDTTQSAEGSVDDLFILNTSADKNAPNKPLLGMQILKPIVYYEAGKRQQGYPFINEAFTDRALYNMLGETTCRNFKAQAKIRDIASGI*