Scaffold Ga0005235J37282_1020475

Overview

Basic Information

• Taxon OID: 3300002693
• Scaffold ID: Ga0005235J37282_1020475
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_165m_A (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 740
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098440	Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005235J37282_10204751	F098440	N/A	IVSPYVMKLNAPSVLPMVFDDPRRHTLEVTVEHKQGEMVHIKTNAPEVSSFKVTTNGVQRVLELNGEKLVVVDYTKADKKFKQVLLLPTGEHVTVSLDWATWNPLTNKVNMMIEAPTRKFNVNTNYDLTNIKAGKMMVKVHGENPLLGKFEIMRNGNWNVDATQIDAKWNGKATFAKGPLAVFSPIDTDAKVNYNFANMVLGANIEKTIVGQKWGLNVSQNKISLITGRP*