Scaffold Ga0005483J37271_109273

Overview

Basic Information

• Taxon OID: 3300002680
• Scaffold ID: Ga0005483J37271_109273
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF132 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1509
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012796	Metagenome / Metatranscriptome	277	Y
F022716	Metagenome / Metatranscriptome	213	Y
F036359	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005483J37271_1092731	F036359	AGAAG	VIRLSLYSNGSNVRYRKLESYQRHGGVDITKVHKLGENAKLKHNGADGVVLINQVIITISA*
Ga0005483J37271_1092732	F012796	AGGAG	MAALPLSHVCALLLVKQTWCQEGFPMKMNGQSRTFVKQVKLDLLALSDADLAQIIQQWVERSNLIEKSPDVAEETWFALGYSRELADTEALTQLGFNVSGSESEKPASWNAPDPQYLRTLLTAMDEQQFAQHVITLAFQSLHSIYPEWYDGLTFNAHLANYLRQINLKRRTMTIK*
Ga0005483J37271_1092733	F022716	GGAG	MKYYVTYCITHPEHTPMTSTGLVEARTRLDLEARLERGVVKWKKRGYSIEIVKVACIEE