Scaffold Ga0005481J37269_103355

Overview

Basic Information

• Taxon OID: 3300002671
• Scaffold ID: Ga0005481J37269_103355
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF130 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 783
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011643	Metagenome / Metatranscriptome	288	Y
F045561	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005481J37269_1033551	F045561	N/A	GLVGCRVRDLEPDFRKEGGGSGREPRAGRQPDSRKANPRNGETPKASCGGFIAVKVTGGAGVKASARWAGGRPEGGEAQEGRGSVGA*
Ga0005481J37269_1033552	F011643	AGG	VRLTARGHEAAGEIRYGSAERDKSLKGKPWTWQRDETSPQRLEAEQTLEAVRNGEEGTYFGVGIP*