Scaffold Ga0005454J37223_103290

Overview

Basic Information

• Taxon OID: 3300002660
• Scaffold ID: Ga0005454J37223_103290
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF103 (Metagenome Metatranscriptome, Counting Only)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 843
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006591	Metagenome / Metatranscriptome	369	Y
F031504	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005454J37223_1032901	F031504	AGGAG	MPRAFTTRKWELAARGRDYQLIPTFPRLPGIIPEDPAGRPPLNEATSAQTFR
Ga0005454J37223_1032903	F006591	N/A	VGARHTLFPIRRSLGAPPLQVGGRLLDASPRGNAEFSVSWQDRRPDCSKRLLGEAFQRGSHGPCRGSVPHKVMRPLRHGLVTAVRQVGPRELPPERWPDGTGLASYPSSDI*