Scaffold C688J35102_120987348

Overview

Basic Information

• Taxon OID: 3300002568
• Scaffold ID: C688J35102_120987348
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7368
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000580	Metagenome / Metatranscriptome	1010	Y
F022675	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_12098734813	F000580	AGGGGG	VTATEDIATVARQLALLIQTVEEMAGQLKEVRERAESERERTDIQQERIDLAARELSDVSDRLQAAATALRESM*
C688J35102_12098734814	F022675	AGCAGG	MRSNRRKNWFIKRIALGVAIAAVVAPVAQAKVDESSIAQAHTYQPVPAQGYQTFATDFPYRSSSSGDALKGIAYRQFVTDSPSSQVVASDYGMPRPTATDYAISRGDLVEVVRSIPNGTSSDKIEFVRTQPRSIGEPQVVSAGFDWKDAGIGAGLALALILLGGGAALASRHVGRPETA*
C688J35102_1209873487	F000580	AGGGGG	VTATEDIATVARQLAVLTQTVEEMAGQLEEVRERAESERERTDIQQERIDLAARELSDVSERLQAAATALRESI*