Basic Information | |
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Taxon OID | 3300002568 Open in IMG/M |
Scaffold ID | C688J35102_120985659 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from Hopland, California, USA - 2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6283 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California |
Source Dataset Sampling Location | ||||||||
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Location Name | Hopland, California | |||||||
Coordinates | Lat. (o) | 38.99297339 | Long. (o) | -123.0674491 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000810 | Metagenome / Metatranscriptome | 882 | Y |
F002103 | Metagenome / Metatranscriptome | 593 | Y |
F034864 | Metagenome / Metatranscriptome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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C688J35102_12098565910 | F034864 | GGAGG | MQGEPFVLTIAQALSYIAGDGRSFWKLIGLLFLVIAFLIALWLIWVGLRRIIEKIAAAFRRK* |
C688J35102_1209856595 | F000810 | N/A | MFISTVAHGGAGYLRSNHHFPPGRLTIDRAPNFGWNLGFHLQIDGKPVTSIAQGHSYSTWLSAGPHVLTVLKVPASGYTEPTSTTVNIQPGAEHLYVAMWDSNLVYLQPAGFWLTPGAYWQNHGDGAP* |
C688J35102_1209856599 | F002103 | GAG | MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHKGMTLPGQVLRIDLRPAFRKPLADVMPKFRAVSIGYTFTPQR* |
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