Scaffold C688J35102_120884776

Overview

Basic Information

• Taxon OID: 3300002568
• Scaffold ID: C688J35102_120884776
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2015
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027039	Metagenome / Metatranscriptome	196	N
F060881	Metagenome / Metatranscriptome	132	N
F073608	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
C688J35102_1208847762	F060881	AGG	VTRALIIAAILFVPTSVCALDIGARLPIKYGEIFMVRNDGGISNWSSYFPYGATCPVKWRLPMWLVVTRVVADRVLLTVDLNNQVAELSCPHGTETSMPYAQARKRYEDYVRALDNKLFSDLNVGN*
C688J35102_1208847763	F073608	GGA	MMRALVVAASLLVPVPACALEIGARLPTRYGEVIVVKNDGGVKNLTTYFPYGSICHTDLDLKTWLIVKRIVGEQTLLVVDFGVEITRLSCPHETETNMRYAQARKRYEDYVRALDDKFFSDLNGGN*
C688J35102_1208847765	F027039	N/A	PKKFTPANLQKIKDWVAEGISREEIAKSLDVAIGSLQVTCSRLGISLRAPKMFERRRRTESRPYIPNHPLMVGHIGPEPQYPRFQIIFEYNGLQQVTDVSLAGPDVARLALEAELQNLGTTQFLTQAVTTAIKKDLIDEILRGSSQEPAPQTHPESSVAAPSDRTLNGHQSIAPISSRVS