NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25382J37095_10127536

Scaffold JGI25382J37095_10127536


Overview

Basic Information
Taxon OID3300002562 Open in IMG/M
Scaffold IDJGI25382J37095_10127536 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012563Metagenome279Y

Sequences

Protein IDFamilyRBSSequence
JGI25382J37095_101275362F012563GGAGGMFLGGFAGGFLARGLTHIGYGIYFTTSRLIGIDLGAXGGGALGGTLAGFIHGELMPKLSSXESAKTITXLEQMKEFEIEKDQISRIELKKPGLLGTGHIVITPKEGKPEKITLRHRIAYNRLITLTKAFSPEVVRPS*

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