Scaffold JGI25382J37095_10065779

Overview

Basic Information

• Taxon OID: 3300002562
• Scaffold ID: JGI25382J37095_10065779
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1362
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010015	Metagenome	309	Y
F010452	Metagenome / Metatranscriptome	303	Y
F011353	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J37095_100657791	F010452	N/A	LRAKREKLMALTFKLDSTTGEGTFIRVLRDGQPFGKILDAMGSYRFYEGDREKLGGAALQDADLARLKMAIQSRYGGRDR*
JGI25382J37095_100657792	F011353	GGAGG	MNADATPPAWNGYRLTVACPCGVMFERWVTPLDAELDLLRAAGLN*
JGI25382J37095_100657794	F010015	GGAG	MLTELLAFLDELLSYLESVRDVRGEEGSPARRSPEIERLSQKTRALRDAVSAERQKH*