Scaffold JGI25382J37095_10058697

Overview

Basic Information

• Taxon OID: 3300002562
• Scaffold ID: JGI25382J37095_10058697
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022177	Metagenome / Metatranscriptome	215	Y
F029395	Metagenome	188	Y
F049864	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J37095_100586971	F029395	N/A	YSEVREAETDGRLKDLLVGLIDSSKALDVRVWLDGVYTDIGDEQVRGDWMNDRDVYFKVEGRVDKRNGS*
JGI25382J37095_100586972	F022177	GGCGG	MKDTRDAAIESYKWTAFLKLKGQTSLRNEEEILDEFDGFVQSLQRVGVDYSIIVMVEGRAPRQLHSAYNARATEAKIARERPGA*
JGI25382J37095_100586973	F049864	N/A	MAKFILSVGDGTFKILASEAKRRDVTVQQLLRAVIVPEWVRENVEENPPSMAPREIAPHLMHQSIYPGQRDQMLQIPVNRLRP*