Scaffold JGI25382J37095

Basic Information
Taxon OID	3300002562 Open in IMG/M
Scaffold ID	JGI25382J37095_10014073 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002562 Open in IMG/M

Scaffold ID

JGI25382J37095_10014073 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3039
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3039

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F035244	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J37095_100140731	F035244	N/A	MENMKPVKSMFGEVGGLAMSKPGAVNFSRINVISLLAGALAVASVFLPWWGIDASGFGSSVSARWTLWNGPSTDSIFRGSTQAYPTLTSASPIIGALAVISVLLALAGSFTWNIRPLIGSFILSVLTPIAYLGVVSYAVTNSCSGQSNCLSGPFGTETFFGITLNWGFQIGFYLYLLLEL
JGI25382J37095_100140732	F015579	GGGGG	MRLGSDSKKPPRPRHRFSFSGQSKRPEGSSMPRAANVTRDDILNSLTKHAHPQEPEETTPETEEAAXFQGPNGTAVEARARNRGSARGAIVIFLGGFAAVWLYGYVTGAYDIPYLRGVTESPAVRVGVQLASSNPILFGAVSVSVLLGALYLLHRKKN*
JGI25382J37095_100140734	F012334	N/A	MSSKRPVELGRDARLFLLFLSEINLVMGSLFFVYPSLMIGLWPWTVKALAVRFIGAIFLAIAFGCWSALRARIWQRAKILVLVGGTFFGITSIVSIVLAISQGGGYVVSTWTGYFLLSSMGNFYLLNRYGWPRKPQDRLGASQPWKTARWFFRIQTVIVGIFGIMMLLLPDLAQHEFWPWMVLTPTLQMFAGLFLATCLATAWASFQTDVGRIRVLLPLDVIFPSLALLAVAIHWNVILIESPGTAVTGVWVFIYAFVAVGSAYLYFFSRKTRVM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25382J37095_10014073

Overview

Ecosystem & Geography

Associated Families

Sequences