Scaffold JGI25382J37095_10002375

Overview

Basic Information

• Taxon OID: 3300002562
• Scaffold ID: JGI25382J37095_10002375
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6099
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004152	Metagenome	450	Y
F036177	Metagenome / Metatranscriptome	170	Y
F040544	Metagenome	161	Y
F054745	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J37095_100023751	F036177	N/A	ILALWRLAGPSQHILEKSLWDSYHNIIEYSRKLRNGWRNRDEYLTRYAARVIALFAGKAIVALNDISIVSENYVWHQVIGAKKRPKHLGTDYPISLGIRGTKDTSKVYVSALRLCGETLRLIRDNFREKAKHERFRALLAEPLEKHGL*
JGI25382J37095_1000237510	F054745	N/A	LIVFVDGPVHLKTSQMMKDEELRTLLRKRGYTILELSYSSYSDKKRDELYREILNGLGK*
JGI25382J37095_100023753	F040544	GAG	LNQTRAGRAKSFAGEGTVYWLIVTAILLSYLTVAVALASGLLYFSFTLALGVLELVLAYACWTLKKWGFLASTVSAIVVAGLAFGILYSPIGDLLLLLQLQVILFAYRAHRESVAITSHC
JGI25382J37095_100023755	F004152	GGA	LTKIVADDLQNDEVSSLVEYMTAVSSGQIAQHKKLVEVTGLSNTKIKFLVKKFLYSRHVPGYRVLETAGNFEIVRLKPEEKRTEQHETLSPTMLPESIGLGGLPRWGKPSDMIEWEGQPPPMKKERYKKQ*