Scaffold JGI25384J37096_10005184

Overview

Basic Information

• Taxon OID: 3300002561
• Scaffold ID: JGI25384J37096_10005184
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F005332	Metagenome / Metatranscriptome	404	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25384J37096_100051844	F001330	N/A	MMGPCGVVAMLLLHAGQASPLNGTWELTRIFRAGPVPSTRAVPIDSTVYLRITLETHVGDWISGRLYRRYRGEPDRSKVEAGPLRGEGRFIIGVEIEKPAWARARTAAWLVGDTLRFGTSLVPDADSLELRRVSPDAPYPASVLDVVTPP*
JGI25384J37096_100051845	F005332	N/A	MTRLRLTSFCVTLFSVTLFLSCGGDRSRSPTCGMAQLIGPSLIQDRLRRLPFVLTEAPRGLPGTLPVRVVGTPQQSTVLVTYTKGALTMEYQGAGFPATSVSDTTAYAVLVVDDSTQRAQGVLIYESHRPPEGYPSIGSLTGQDRTMPVYGVRVDWAGVSNPKCPLLGTPAAPPSSAQ*