Scaffold JGI25384J37096_10002836

Overview

Basic Information

• Taxon OID: 3300002561
• Scaffold ID: JGI25384J37096_10002836
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6057
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F022171	Metagenome	215	N
F077139	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25384J37096_100028361	F077139	N/A	CGSDEVFLWLGGSIGSLYHCTDCQYIGPVVLETDAQQPSTNQFMSFWDLVEGGSFWSETGISNQMLFQM*
JGI25384J37096_1000283610	F001816	N/A	VPLSPETRKEAEKRLTVLKMIEVFADKCPKSTLLNGPFGGDDKAFDRLLGPSGILTRTSLILASTDGRVTHYSRTDAGKIYQQVLDMQLNFLDPYTGGEVWKK*
JGI25384J37096_100028369	F022171	AGGAGG	MADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFAQPGGLGFPMRQSVDASAVVETALTVVLFLLSVISIYSLLGLRRRYSRLLAMAEKLGR*