NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25383J37093_10056543

Scaffold JGI25383J37093_10056543


Overview

Basic Information
Taxon OID3300002560 Open in IMG/M
Scaffold IDJGI25383J37093_10056543 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1252
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022172Metagenome215N
F061708Metagenome131N

Sequences

Protein IDFamilyRBSSequence
JGI25383J37093_100565432F022172GAGGVTTQFTXDLTRPGWAXRSRWEWFLGPDGPRRLAIAAAAGVALVILVALGGVLPRYLRHSSEVQAIATLRREVTVAGDELASLRTNLRDLGAEARRRVRWSEMLPALSHPLPGALRIDRVSLSKVARQPQQTETQPGDAKPFDLLLQIEATTTVVPGGSRLVEIANFMTALAQDPVLATRFQLKTWDVRPAGAQGGEEQLHISIGLAEKRS*
JGI25383J37093_100565433F061708GGAGVKGRGLLVGWIVTVLAVLAGLGWXVAQTISLSRLGATADAQRAGLAREVEGHRQSIQAELVARTDLLKEIRWTSDRAPADEVLRRLADMARGGHAKVLAIAPLERESTPRYRKSSHRVDMAVPFRDFVDFATRVEREGGILEEVVLEGTRGAKPVDEAG

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