Scaffold JGI25383J37093_10009057

Overview

Basic Information

• Taxon OID: 3300002560
• Scaffold ID: JGI25383J37093_10009057
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3234
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045640	Metagenome / Metatranscriptome	152	Y
F066007	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25383J37093_100090574	F066007	AGGAGG	MSMRLFFLVLTLGGSIYLFLREHGDRRFAIGALVASSLGLLLQLNVIALRVQYARTIIWTAIAVCAGIIWNREASKSGATVAATMAFVSTLCVALSLRLLR*
JGI25383J37093_100090575	F045640	N/A	MEAFLKRVAYGWHGPILVDQGFLSHLGWAFAVPLFGFWLGGRRWLRIAALAWIASAVWRELVEEALDATTISDLVSRIAPVFLLVAIDAVRTPAPATQAS*