Scaffold JGI25383J37093

Basic Information
Taxon OID	3300002560 Open in IMG/M
Scaffold ID	JGI25383J37093_10001854 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002560 Open in IMG/M

Scaffold ID

JGI25383J37093_10001854 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6009
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6009

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011833	Metagenome	286	Y
F016379	Metagenome	247	Y
F028762	Metagenome / Metatranscriptome	190	N
F042822	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25383J37093_100018542	F042822	N/A	MLLITIILLAILFYWQLFVVKDLNLLGAVFWIIFPDLASFLPIGLAMRGAKEWPRWGPRLYNFFHTLLVWIPVFALWSVLSGAVQWPLLGWAGHITADRSVGYYLRAASKKATD*
JGI25383J37093_100018544	F028762	N/A	MFDIAKLGAMVRIMSETLEKQERWKQQKEEADRQRIGGAYIQGFMETAVALVGEEPLFSKGYWKCASGCKPFGLGLARTPRECPSCHKQLVLWVPGP*
JGI25383J37093_100018547	F011833	GAG	MKTFIASFVKGQILLLAPQPALILLVLYNRVSFYYSAPVVISLAVLWGWFDYSGKAQRRGASVLKKLERLVDDFGWLNFQEGGGAGNETVVALLDKASFGSSTLTTPQLAMATTEKIKEVYFTLELWYFSMRQKVRLLLRKAALMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSDTKVRALEADPWFKTVTEISERKQSPP*
JGI25383J37093_100018548	F016379	N/A	MTSYREEFVRLLYGIILAQFIVIAILLAGFSSEYLSSIYFRIWVDTNLPQLGLLLTGQVDALLVGMALGATILLIQQMKNGARMNEGTAAILAQAGSLTQTPERLPNRAAPTRKSEVATETPEQVLGELEKQDF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25383J37093_10001854

Overview

Ecosystem & Geography

Associated Families

Sequences