Scaffold JGI25383J37093_10000538

Overview

Basic Information

• Taxon OID: 3300002560
• Scaffold ID: JGI25383J37093_10000538
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9151
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25383J37093_100005383	F005700	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWFVTVVVVYIGVPLLIWSLLVDRLAFMVLRIICRLRESSGHQYYFERQVGKPGVSRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWASRWLSSLGGIGAFVSFAVAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRHSKAAMTMGRLFPENFGPSLPSSSAPTLRSVRMNEETKQTAEPRS*
JGI25383J37093_100005384	F007915	N/A	MSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLDEIGNGLAQVWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGFFYVSEPDATYAASGLKISSYNTTHFIGLGLIGFTMIVLIALAFYLTRAKSAHRALPKQDPGSTN*
JGI25383J37093_100005386	F003037	GAG	MWVEFKCPLCGKDLDDDKTMANFLVCGDSSHGLLRFFTGDGCYFTTNEQVAEELMKKGKRVHIVDPKEFLGNQTINLE*