Scaffold JGI25383J37093

Basic Information
Taxon OID	3300002560 Open in IMG/M
Scaffold ID	JGI25383J37093_10000239 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002560 Open in IMG/M

Scaffold ID

JGI25383J37093_10000239 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11890
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11890

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016652	Metagenome / Metatranscriptome	245	Y
F025003	Metagenome	203	N
F082195	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25383J37093_100002393	F025003	GAG	LERTLALAILEDLVPNGIRFGASYLVEFGPDSPWYETSLTIAASALRNGARTEYHTYMHPPHEVRDSLTKLGLKVKELEQKDHLRILDTYDVMTGLAHPETPEGMRAKGREAYEHQSFDLNHWSSKVVTMLQEGVAEDEKQWLHIDDNTSVMCHYTDEKLMIDIWRTRIIPYARVRGLAMFHSLMMGIASDSFYKQFESLCDGIIEFRSSDEGGQVEHFARVRTLRGMSSDNRWRRLQLHNDGSVTIDAGSKPKELGIGGWLKGPKKSR*
JGI25383J37093_100002397	F082195	AGGA	LISTLDASSKLWFERLYARVGLPFWAGVLVLGFLPPLILTSLGYYSYGVKTDFTGGISLGVPLLLANTIYILFSSRYIRRRIEELEQYAVSIGADKSRIETSYLNDFRAVVVTWVVLLAAGVLVLEPVFNPGYSLFQDLLRELLYSYMRLLQATFLWVFLSSMVAIYRMGRRPLRLKVFTDDRTLGLKPFATTSLHLTTIYVVAILLTFPIFLYPSFAVELSLTIFLVPGLFFFLVPLFGLHKKMSEVRSEKSALIGLRHSRVMAEVEVAGEQPLSEGLVNELLAIDAIKREIHQIHEWPI*
JGI25383J37093_100002399	F016652	GAGG	MVLFGXVFVLLGIVAESLYISSAKIVYSGATISANGFMISGLFLIVLGLLLTLSGARISKIRIPHA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25383J37093_10000239

Overview

Ecosystem & Geography

Associated Families

Sequences